Halen: this is a good question --
I'm not 100% sure what year the change was made, but since I've been on the forums here (I guess a couple years now) I remember seeing more pout faces (

) from guys like me with the '04 valves. I think Honda addressed the valve coating process... something about making whatever hardening the valves go thru 'thicker' or somehow more durable.
The actual seat material in the head was also brought up for discussion a few times, and I think Honda may have even advertised a 'harder' or 'improved' valve seat material in '06 (don't quote me on that). So I'm pretty sure there have been changes along the way.
On whether or not to do a valve rebuild this winter: the best advice I can think of would be to just keep up with checking your valve clearances, and make sure to keep your air filter clean. Other than that, you're not really doing yourself any other favors by rebuilding the head before it's needed -- BUT (and a big but here), I wouldn't run the stock valves any longer than the 2nd or 3rd smallest shim in your kit (I think a 1.35mm). The edges just get too thin and may snap off causing more costly damage.
Really I'd just keep checking the clearances. When the valves start to move, reshim, and record the date. The next time they need shimming, so it again and record the date. When you start getting less and less ride time between shimmings, start hunting for a good machine shop that can recut the valve seats in the head, and get your parts ordered. It won't be long until you'll need the rebuild.
Jimmy: they only offered a Stage 1 when I ordered my Hotcam. But 3rd gear got its wakeup call. I couldn't get over how much more fun 2nd gear was though.

I'll never forget grabbing too much throttle around my first turn in 2nd with the Hotcam. Front wheel came up like it didn't belong on the ground anymore. It's a great hop-up. 2-thumbs on the Stage 1 in my book.